PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139241.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 189aa    MW: 21377.1 Da    PI: 10.369
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702165.82.5e-51341784154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 
                      ++ C+dCGn+akk+C++eRCRtCCksrg++CathvkstW+p++  ++++++++++ss++      +++k+ + ++s++ s l   +++s  +++
  XP_009139241.1  34 EEKVCRDCGNRAKKECSFERCRTCCKSRGYKCATHVKSTWIPSSSSSSHHHHHHSPSSDR------NRNKKLKIDSSNNPSVLIVPTTTSRRQER 122
                     6789****************************************9999877777664443......33444444445555566666655555555 PP

          DUF702  99 eletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                     ++    lP +++++avf+++rv+++++ ++ e++Yq++v+i Ghvf+G+L+++G+++
  XP_009139241.1 123 SFRE-GLPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTIHGHVFRGFLHYHGVDH 178
                     5544.4*******************9857789***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.3E-4636177IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.0E-253777IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.5E-26128176IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MLGLRNIILL PPPSQIIHPS VEDNNNKSRN SNVEEKVCRD CGNRAKKECS FERCRTCCKS  60
RGYKCATHVK STWIPSSSSS SHHHHHHSPS SDRNRNKKLK IDSSNNPSVL IVPTTTSRRQ  120
ERSFREGLPG KIEAPAVFKR TRVTAISNEE QSEIGYQATV TIHGHVFRGF LHYHGVDHNK  180
AFPCLSNKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139241.11e-138PREDICTED: protein SHI RELATED SEQUENCE 6-like
SwissprotQ9M2U43e-91SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBLM4DE971e-117M4DE97_BRARP; Uncharacterized protein
STRINGBra014818.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM119592332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.19e-90SHI-related sequence 6